C/SiC composites were multi-phase materials consisting of C fibers, SiC matrix, and a thermally decomposed carbon interface layer between the two. This paper analyzed and tested the microstructure and nano-mechanical properties of the fibers, matrix, and interface, thereby complementing the results of macro-mechanical property tests. Optical microscopy (OM), scanning electron microscopy (SEM), and energy dispersive spectroscopy (EDS) were employed to characterize the refined microstructure of the C/SiC cross-section. Nanoscratch testing was conducted to measure the hardness and equivalent modulus of representative regions. The results reveal that the C fibers in the C/SiC composite exhibit a “skin-core” structure, with a diameter of approximately 7 μm. The ring-shaped region within a 1.5 μm range of the outer layer has a hardness of (5.45 ± 0.28) GPa and a reduced modulus of (33.1 ± 1.4) GPa; the core region has a hardness of (6.85 ± 0.21) GPa and a reduced modulus of (33.8 ± 0.34) GPa. The SiC matrix comprises three forms: large matrix blocks distributed between fiber layers; small matrix blocks distributed around the large matrix blocks; and fine matrix particles distributed within individual fiber bundles and between different fiber strands. Due to the differing high-temperature pyrolysis environments experienced by these three types of matrix, there are significant differences in hardness and reduced modulus, with hardness values of (34.8 ± 2.64), (23.6±2.27), and (21.3±1.81) GPa, respectively, with reduced modulus of (210±19.7), (165±8.58), and (124±10.8) GPa, respectively. The interface layer thickness between C fibers and the SiC matrix is approximately 0.3 μm. Its mechanical properties exhibit significant variability, lying between those of the fibers and the matrix, thereby serving as a performance transition layer. Its hardness is (13.6 ± 3.03) GPa, and its reduced modulus is (99.3 ± 13.0) GPa.